rs31776620 SNP Detail

Summary

• ID
  rs31776620
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92471558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATGAAGG AAAGGGACAC
  TTGCCCAGAT CTGATGTTAT CACGACTAGG CTCAAGGGCG TGATGAAATT TTGTTGGCTG
  TGTAGAACAC AGAGTTTTTG CCTCTAGCAA TTGTTACTAT TGGAGTTTTG CAATTAACTT
  CCTAAAGTTA GTTATAATTT CAAATTAACA CTTTATGTTT TGTAGTTGAG TTAATGTATT
  W
  AAAGCCTATG TATTAAAGGC TGCTCTGCCA GGGAAGGCTT TTCAGTACAA TCTAAAACCC
  ATTAAGATTC AGGGTGCTTG TTGGTAAAGT AATGGTCTCT TATGTAGTCT TCCTTGAACG
  ACGACGACTT TGGGGTGTTT TGGGTTTTCT GTTTTTCATG TTCTTTTGAT GTTTTTTCCC
  CCTCTTTTGC TTTTTCTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46603455	NES10422436	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31776620					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46603455	NES10422436	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92471558 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614602	regulatory region 614602	1512 bp distal
Rr614603	regulatory region 614603	62 bp distal
Tssr47287	transcription start site region 47287	708 bp downstream
Tssr47288	transcription start site region 47288	68 bp upstream
Tssr47289	transcription start site region 47289	85 bp upstream
Tssr47290	transcription start site region 47290	97 bp upstream
Tssr47291	transcription start site region 47291	138 bp upstream
Tssr47292	transcription start site region 47292	1418 bp upstream
Tssr51864	transcription start site region 51864	957 bp upstream
Tssr51865	transcription start site region 51865	873 bp upstream
Tssr51866	transcription start site region 51866	593 bp upstream
Tssr51867	transcription start site region 51867	within coordinates
Tssr51868	transcription start site region 51868	48 bp downstream
Tssr51869	transcription start site region 51869	94 bp downstream
Tssr51870	transcription start site region 51870	136 bp downstream
Tssr51871	transcription start site region 51871	170 bp downstream
Tssr51872	transcription start site region 51872	1413 bp downstream