rs31776622 SNP Detail

Summary

• ID
  rs31776622
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:92472040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG CCCTTTGGGG CTGGCTGGTA
  S
  CGTTATCACT CACTTTGCAT ATTAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45769062	mCV25083324	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		C
ss46603457	NES10422438	PERLEGEN	MM_PANEL2	f	SNP	G		G	C	C	C	C		C		G		G	G		C
ss148831412	ENSMUSSNP3138936	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							C
ss321612240	CHEV_5_92753207	CHEVERUD	SCREENING_POP	f	SNP												C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31776622					SNP	G	G	G	C	C	C	C	G	C	C	G	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46603457	NES10422438	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92472040 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	Intron
Rr614602	regulatory region 614602	1994 bp distal
Rr614603	regulatory region 614603	544 bp distal
Tssr47287	transcription start site region 47287	1190 bp downstream
Tssr47288	transcription start site region 47288	402 bp downstream
Tssr47289	transcription start site region 47289	392 bp downstream
Tssr47290	transcription start site region 47290	377 bp downstream
Tssr47291	transcription start site region 47291	335 bp downstream
Tssr47292	transcription start site region 47292	936 bp upstream
Tssr51864	transcription start site region 51864	1439 bp upstream
Tssr51865	transcription start site region 51865	1355 bp upstream
Tssr51866	transcription start site region 51866	1075 bp upstream
Tssr51867	transcription start site region 51867	473 bp upstream
Tssr51868	transcription start site region 51868	427 bp upstream
Tssr51869	transcription start site region 51869	385 bp upstream
Tssr51870	transcription start site region 51870	335 bp upstream
Tssr51871	transcription start site region 51871	300 bp upstream
Tssr51872	transcription start site region 51872	931 bp downstream