rs31776623 SNP Detail

Summary

• ID
  rs31776623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92472299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGGGGCAC ATAGCAGATA
  TCCTGTGTCT CAAGTATTTA CATTATGATT GTTAACAGTA GCAAACATTA CAGTTATGAA
  GTAGCAGTAA GATAACTTTA TGGTTGGGGG TCACCTCAAT ATGAGGGACT CATGCATTAG
  GGTCTCAGCA TTAGGAAGGT TGAGAACCAC TGAAACTGGA CAAGGCTAGG CGAGTGAGTA
  R
  CCTGAAGCTT AAGGGCTAGG GTCTAGGGCA GACCCAGCAG TTAGGTGTGG GGACCCAAGC
  TCCCCACCAC ATACCCCATG GCTCTTCTCA AACCCAGCTC CTTAGCTATC TCACAGCTCT
  TTTCCCTTTT TCCTTGGCTC CTTTCTCATC TCAATCCCTT TGTTCTCTGC ATTTAAATTC
  CAGTTACATT ACTTCAGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46603458	NES10422354	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31776623					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46603458	NES10422354	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92472299 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614603	regulatory region 614603	803 bp distal
Tssr47287	transcription start site region 47287	1449 bp downstream
Tssr47288	transcription start site region 47288	661 bp downstream
Tssr47289	transcription start site region 47289	651 bp downstream
Tssr47290	transcription start site region 47290	636 bp downstream
Tssr47291	transcription start site region 47291	594 bp downstream
Tssr47292	transcription start site region 47292	677 bp upstream
Tssr51864	transcription start site region 51864	1698 bp upstream
Tssr51865	transcription start site region 51865	1614 bp upstream
Tssr51866	transcription start site region 51866	1334 bp upstream
Tssr51867	transcription start site region 51867	732 bp upstream
Tssr51868	transcription start site region 51868	686 bp upstream
Tssr51869	transcription start site region 51869	644 bp upstream
Tssr51870	transcription start site region 51870	594 bp upstream
Tssr51871	transcription start site region 51871	559 bp upstream
Tssr51872	transcription start site region 51872	672 bp downstream