rs31777062 SNP Detail

Summary

• ID
  rs31777062
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19296766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATT CGAGGCTAGG CTGGATTACA
  W
  AGGGAGCCTC AGACAAGCAG GTGCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46067766	mCV25052536	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss148478845	ENSMUSSNP6785603	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss322117457	CHEV_7_20148190	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31777062					SNP	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19296766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18499	CpG island 18499	32 bp distal
Ppp1r37	protein phosphatase 1, regulatory subunit 37	within coordinates
Rr643188	regulatory region 643188	334 bp distal
Rr643189	regulatory region 643189	225 bp proximal
Rr643190	regulatory region 643190	1726 bp proximal
Rr643191	regulatory region 643191	1810 bp proximal
Tssr70928	transcription start site region 70928	675 bp upstream
Tssr70929	transcription start site region 70929	644 bp upstream
Tssr70930	transcription start site region 70930	593 bp upstream
Tssr70931	transcription start site region 70931	440 bp upstream
Tssr70932	transcription start site region 70932	404 bp upstream