rs31777465 SNP Detail

Summary

• ID
  rs31777465
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92472523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGCAGAC CCAGCAGTTA
  GGTGTGGGGA CCCAAGCTCC CCACCACATA CCCCATGGCT CTTCTCAAAC CCAGCTCCTT
  AGCTATCTCA CAGCTCTTTT CCCTTTTTCC TTGGCTCCTT TCTCATCTCA ATCCCTTTGT
  TCTCTGCATT TAAATTCCAG TTACATTACT TCAGACTCAC TGAACAGACT TTACTCAAAA
  Y
  CACCAACGCC CACACTGTAC TTAATTAACT GCCTGGTAAA TGTCTTATCC TCAAAGATCC
  AGATCAGAGA TCACTTGATA GGAGAAGTCT ACCTTAATAC TTTCTATATT GTCTCTTGGT
  CAAGTCAATT ACCCTTTCCA TCATAATTCT CAAAGTTCTC ATGTACACAC TATTTATTCT
  AAATGTCTCT CACCACGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46603460	NES10422356	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31777465					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46603460	NES10422356	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92472523 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614603	regulatory region 614603	1027 bp distal
Tssr47287	transcription start site region 47287	1673 bp downstream
Tssr47288	transcription start site region 47288	885 bp downstream
Tssr47289	transcription start site region 47289	875 bp downstream
Tssr47290	transcription start site region 47290	860 bp downstream
Tssr47291	transcription start site region 47291	818 bp downstream
Tssr47292	transcription start site region 47292	453 bp upstream
Tssr51864	transcription start site region 51864	1922 bp upstream
Tssr51865	transcription start site region 51865	1838 bp upstream
Tssr51866	transcription start site region 51866	1558 bp upstream
Tssr51867	transcription start site region 51867	956 bp upstream
Tssr51868	transcription start site region 51868	910 bp upstream
Tssr51869	transcription start site region 51869	868 bp upstream
Tssr51870	transcription start site region 51870	818 bp upstream
Tssr51871	transcription start site region 51871	783 bp upstream
Tssr51872	transcription start site region 51872	448 bp downstream