rs31777466 SNP Detail

Summary

• ID
  rs31777466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92472643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATA CTTTCTATAT TGTCTCTTGG
  Y
  CAAGTCAATT ACCCTTTCCA TCATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45812577	mCV25083300	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		C
ss46603461	NES10422357	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	C	C	C		C	C	C	T		C	T	T	T		C
ss321612246	CHEV_5_92753810	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31777466					SNP	T	T	T	C	C	C	C	T	C	C	C	T	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46603461	NES10422357	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92472643 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614603	regulatory region 614603	1147 bp distal
Tssr47287	transcription start site region 47287	1793 bp downstream
Tssr47288	transcription start site region 47288	1005 bp downstream
Tssr47289	transcription start site region 47289	995 bp downstream
Tssr47290	transcription start site region 47290	980 bp downstream
Tssr47291	transcription start site region 47291	938 bp downstream
Tssr47292	transcription start site region 47292	333 bp upstream
Tssr47293	transcription start site region 47293	1981 bp upstream
Tssr51865	transcription start site region 51865	1958 bp upstream
Tssr51866	transcription start site region 51866	1678 bp upstream
Tssr51867	transcription start site region 51867	1076 bp upstream
Tssr51868	transcription start site region 51868	1030 bp upstream
Tssr51869	transcription start site region 51869	988 bp upstream
Tssr51870	transcription start site region 51870	938 bp upstream
Tssr51871	transcription start site region 51871	903 bp upstream
Tssr51872	transcription start site region 51872	328 bp downstream