rs31777469 SNP Detail

Summary

• ID
  rs31777469
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92472958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGGGGGA GGGGTGATAG
  CTTATTAATT TTGAATCCTT AGTGTCTTAC TAGTTGATGC TATTCAAAAG GATGGAAAAT
  GGGTCCTTAA TGGGTGTGCC CAGGATCTGC TGACTTTGTG AGCTGACCTC TGAAAGAAAG
  CCATTTGGGT TCCTCCCCCA CCAACCTTCT TTTCCCATTC TTTCATCAGC TTCTTCACAT
  K
  TGCCGAGTCC GGATCTAGGC AGGTTTGATC TCCGTTCTTC AGTGTAGCAC TGTGCCAAAG
  AAACACCAGT GAGCTTTCTC CCCCCAGTAA CAACTTCATA ATTCTTAGTA GAAACAGTGG
  AGGAAAACGT GCATTTTATT GAGTTTTCCA GTGAAACCAC TTAAAATGTG GCAAAACGTC
  TTCCTAAGAT TAACAGGTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46603464	NES10422360	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31777469					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46603464	NES10422360	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92472958 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614603	regulatory region 614603	1462 bp distal
Tssr1547	transcription start site region 1547	1703 bp downstream
Tssr47288	transcription start site region 47288	1320 bp downstream
Tssr47289	transcription start site region 47289	1310 bp downstream
Tssr47290	transcription start site region 47290	1295 bp downstream
Tssr47291	transcription start site region 47291	1253 bp downstream
Tssr47292	transcription start site region 47292	18 bp upstream
Tssr47293	transcription start site region 47293	1666 bp upstream
Tssr47294	transcription start site region 47294	1703 bp upstream
Tssr51866	transcription start site region 51866	1993 bp upstream
Tssr51867	transcription start site region 51867	1391 bp upstream
Tssr51868	transcription start site region 51868	1345 bp upstream
Tssr51869	transcription start site region 51869	1303 bp upstream
Tssr51870	transcription start site region 51870	1253 bp upstream
Tssr51871	transcription start site region 51871	1218 bp upstream
Tssr51872	transcription start site region 51872	13 bp downstream
Tssr51873	transcription start site region 51873	1691 bp downstream
Tssr51874	transcription start site region 51874	1716 bp downstream