rs31777470 SNP Detail

Summary

• ID
  rs31777470
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92473087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCCGTTCT TCAGTGTAGC ACTGTGCCAA AGAAACACCA
  GTGAGCTTTC TCCCCCCAGT AACAACTTCA TAATTCTTAG TAGAAACAGT GGAGGAAAAC
  R
  TGCATTTTAT TGAGTTTTCC AGTGAAACCA CTTAAAATGT GGCAAAACGT CTTCCTAAGA
  TTAACAGGTA TATTTTTAAA AACTGTAGCA GATTTTTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss45746242	mCV25083276	ABI	CRAMUS_MOUSE	f	SNP	G	G				G		A
ss46603465	NES10422361	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G		A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs31777470					SNP	G	G	G	A	G	G	A	?	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46603465	NES10422361	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92473087 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614603	regulatory region 614603	1591 bp distal
Tssr1547	transcription start site region 1547	1574 bp downstream
Tssr47288	transcription start site region 47288	1449 bp downstream
Tssr47289	transcription start site region 47289	1439 bp downstream
Tssr47290	transcription start site region 47290	1424 bp downstream
Tssr47291	transcription start site region 47291	1382 bp downstream
Tssr47292	transcription start site region 47292	101 bp downstream
Tssr47293	transcription start site region 47293	1537 bp upstream
Tssr47294	transcription start site region 47294	1574 bp upstream
Tssr51867	transcription start site region 51867	1520 bp upstream
Tssr51868	transcription start site region 51868	1474 bp upstream
Tssr51869	transcription start site region 51869	1432 bp upstream
Tssr51870	transcription start site region 51870	1382 bp upstream
Tssr51871	transcription start site region 51871	1347 bp upstream
Tssr51872	transcription start site region 51872	94 bp upstream
Tssr51873	transcription start site region 51873	1562 bp downstream
Tssr51874	transcription start site region 51874	1587 bp downstream