rs31777471 SNP Detail

Summary

• ID
  rs31777471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92473135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTCATC AGCTTCTTCA
  CATTTGCCGA GTCCGGATCT AGGCAGGTTT GATCTCCGTT CTTCAGTGTA GCACTGTGCC
  AAAGAAACAC CAGTGAGCTT TCTCCCCCCA GTAACAACTT CATAATTCTT AGTAGAAACA
  GTGGAGGAAA ACGTGCATTT TATTGAGTTT TCCAGTGAAA CCACTTAAAA TGTGGCAAAA
  Y
  GTCTTCCTAA GATTAACAGG TATATTTTTA AAAACTGTAG CAGATTTTTC AGGAGAAACC
  TCAATTTCTA AAAATTAATT TCTCTGTATA GCTTGAGAAT AATAATGGCT ATTCTATATA
  GAATTCCTTA TTTTAGTTGT CAAAGGTCAA ATATATTACA TACATGTATG TATATATATA
  TTTATATCCT TTATATATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46603466	NES10422362	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31777471					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46603466	NES10422362	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92473135 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Tssr1547	transcription start site region 1547	1526 bp downstream
Tssr47288	transcription start site region 47288	1497 bp downstream
Tssr47289	transcription start site region 47289	1487 bp downstream
Tssr47290	transcription start site region 47290	1472 bp downstream
Tssr47291	transcription start site region 47291	1430 bp downstream
Tssr47292	transcription start site region 47292	149 bp downstream
Tssr47293	transcription start site region 47293	1489 bp upstream
Tssr47294	transcription start site region 47294	1526 bp upstream
Tssr51867	transcription start site region 51867	1568 bp upstream
Tssr51868	transcription start site region 51868	1522 bp upstream
Tssr51869	transcription start site region 51869	1480 bp upstream
Tssr51870	transcription start site region 51870	1430 bp upstream
Tssr51871	transcription start site region 51871	1395 bp upstream
Tssr51872	transcription start site region 51872	142 bp upstream
Tssr51873	transcription start site region 51873	1514 bp downstream
Tssr51874	transcription start site region 51874	1539 bp downstream