rs31778256 SNP Detail

Summary

• ID
  rs31778256
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:84090254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTGAGCA GTTCACTTAA
  CTGCAAAACT CTCAACCAAC CGACAGAAAA CAAAGAGAAG CGAATGATAG CCAACCTCAG
  CACACAGGCC TTGCGGATCC TCACTCAATT GATTTCTAAT AGTTACAAGT GTCCACGCTG
  TGAGGGCTGT ACCTTCTCCT TGAAGTAAAC AATATTTAAG TGATGTCCAG CATCGGTGCG
  M
  TGATTACTCT AACTGATTTA CTTTAGAAGC ACTGCTTTCT CATCAAAGGC CACTAATGCC
  TGCACTCTAG AGAGAGGCAG ACTTGGAATC TACTTTTAGG CCTACGGACA TCCTCGCCCA
  AAAATAAGTC TGAGTGTGTC CTCCTTAGAC CGCACTAGCA GCTGCCTCTT CAGCTCACTA
  GCTCAGAACT GCTAAAGCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49774072	NES12390874	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31778256					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49774072	NES12390874	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:84090254 () rs orientation: forward

Symbol	Name	Function Class
Dmd	dystrophin, muscular dystrophy	within coordinates
Rr692261	regulatory region 692261	1292 bp proximal
Rr692262	regulatory region 692262	1776 bp proximal
Tssr161429	transcription start site region 161429	1636 bp upstream
Tssr161430	transcription start site region 161430	1661 bp upstream