rs31778257 SNP Detail

Summary

• ID
  rs31778257
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:84089953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACAATAAA GTAGTCAGTG
  TGATACCCAC GTCATCCCTT AATACTTTCA GTATTTTCTA AAATAATACC AAGATTTTGG
  AACAACTGTT TAAGTGCCTA TAACTCCAGT CTAAAAAAGA ACTTACTGCT ATATTTTTGA
  GGATTGCCAT CTGTCAAATT AAAAAAAAAA AAAGTCTGAA TAGCGATTCT ATGTTTTCCA
  Y
  TCTTTGTCTT TTCCCTGACA AATCATTCTT AGGAGTTCTC TAATTGGGCA GTGGGAAAAT
  AGACTCCTGC ATTTATAGTT CAGAGAAACA GAAGTCCCGA ATCTTGAGCA GTTCACTTAA
  CTGCAAAACT CTCAACCAAC CGACAGAAAA CAAAGAGAAG CGAATGATAG CCAACCTCAG
  CACACAGGCC TTGCGGATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49774074	NES12390872	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31778257					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49774074	NES12390872	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:84089953 () rs orientation: forward

Symbol	Name	Function Class
Dmd	dystrophin, muscular dystrophy	within coordinates
Rr692261	regulatory region 692261	1593 bp proximal
Tssr161429	transcription start site region 161429	1937 bp upstream
Tssr161430	transcription start site region 161430	1962 bp upstream