rs31779003 SNP Detail

Summary

• ID
  rs31779003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36346866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCGGAGTCT GCTCCGCTCT AGAAAATAGG
  ATTCACCAAT GGGCGCCCAG AGCGCTGGGG GGGGGCGGGT CCATGGGCGG GTCCGCGGGG
  GAGGAGGCAG TCGAGCGGCG CCGGTAGTCA GTCGCGCCGA GAGCGCTGGG ACAGGACGGC
  Y
  GTGCGTGTAG AGGGTCTCTG CATAGCGACG CGCGCTCTCG CTGGGCCATG GGTAAGCGGC
  TGGCGGGCGG CGCCGGGGTC AGAGGGCTGG GGTCCCAGAG CGATCGTGGC TCTCAGGGTA
  ACCCGAATGT CTGCGTGCTC TCTTCTCGTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45069440	mCV27594641	ABI	CRAMUS_MOUSE	f	SNP		T	C					T
ss51238021	NES14282242	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	C	T	T	T		T	T	C	T		C
ss148924906	ENSMUSSNP2296511	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
ss319688337	CHEV_1_36364630	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31779003					SNP	T	T	C	T	T	T	C	T	T	T	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51238021	NES14282242	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36346866 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	within coordinates
Cpgi139	CpG island 139	within coordinates
Gm70585	predicted gene, 70585	161 bp upstream
Rr366864	regulatory region 366864	125 bp upstream
Rr395991	regulatory region 395991	within coordinates
Rr409283	regulatory region 409283	172 bp distal
Rr409284	regulatory region 409284	6 bp distal
Rr409285	regulatory region 409285	within coordinates
Tssr6253	transcription start site region 6253	50 bp downstream
Tssr6254	transcription start site region 6254	22 bp downstream
Tssr6255	transcription start site region 6255	6 bp downstream
Tssr6256	transcription start site region 6256	274 bp upstream
Tssr6257	transcription start site region 6257	352 bp upstream
Tssr6258	transcription start site region 6258	482 bp upstream
Tssr11252	transcription start site region 11252	1834 bp downstream