rs31779456 SNP Detail

Summary

• ID
  rs31779456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30907946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCGC GGCCTAGCAG CGCCCCCCGC
  Y
  GCACACTTTT CGGGGCCTCA GCACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46068209	mCV24560227	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss148703257	ENSMUSSNP7148287	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss322140290	CHEV_7_31993540	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31779456					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30907946 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18840	CpG island 18840	within coordinates
Gm37292	predicted gene, 37292	within coordinates
Gm73020	predicted gene, 73020	within coordinates
Rr645057	regulatory region 645057	169 bp distal
Rr645058	regulatory region 645058	within coordinates
Rr645059	regulatory region 645059	within coordinates
Tssr65855	transcription start site region 65855	682 bp downstream
Tssr65856	transcription start site region 65856	158 bp downstream
Tssr65857	transcription start site region 65857	131 bp downstream