rs31779679 SNP Detail

Summary

• ID
  rs31779679
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92701117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTCAGGT TAAAATGATC
  TTATAATTGT TAAAAGAAAT GTATTTATTT ACTTGGTTTT ATTTTAAGAC AGGGCCTGTA
  GCCATAGAAA AGGTTTTGGT TGTTGTTGGT TTTGTTTTGT TTTGCTTTGC TTTGCTTTGC
  TTTGACTGTG TTTGGGACTT CTTCCTACCA TGCTTATATC ATGAAGGCAA TATATGAAGA
  K
  CCAAGAGCCT TCTTCAGTGA AGGCTGAGAT GGTTTAAAGA ACAACAGTAC AAGTGTGTGT
  GACCCAGGCT TACTTTTACT TATGTCTGTC TGTCCTGGTT CTCCTTAAGT CTTAGAAACC
  CAACCCAAAT TTAACCAGCT TTTATAGAAT TCCTTGAAAG TTCCCAGGCA CTGTGGCCTG
  AATATTTATG CCTTGCCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46604322	NES10411036	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G	G		G	G	T	G
ss148834712	ENSMUSSNP6061361	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31779679					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46604322	NES10411036	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92701117 () rs orientation: forward

Symbol	Name	Function Class
Fam47e	family with sequence similarity 47, member E	1811 bp upstream
Gm72879	predicted gene, 72879	1842 bp upstream
Rr114837	regulatory region 114837	484 bp proximal
Rr123707	regulatory region 123707	732 bp proximal
Rr125475	regulatory region 125475	1883 bp proximal
Tssr47317	transcription start site region 47317	1777 bp upstream