rs31779683 SNP Detail

Summary

• ID
  rs31779683
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92701814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAACCAC AAGGTAGCTT
  ACAACCATCT GTAATGGGAT CAGATGCCCT CTTCTGGTGT CTGAAGAAAG CAACATATTT
  AAAATAAATA AATCTTAAAC ATCAACAACA AAAACACCAT TTAGTCAGTT CCTTTCTGTT
  ACAACAGAAT ACCTGAGACT GGGTAACTTA TAAAGAATAG TGCTTTACTT TGTTTGGTCC
  W
  TGGTTCAGTA GGTAGCTGCA TGGTGAGGGC CACATGTTGC TTTAACTCAT GGTAAGAAGA
  CCAAAGAATA GCCAACCTCT CAGAAGTTAA ACGAGCACTT GCTGTTGTGA AGAACAGGAA
  TTCAGTTCCA AGCACCCATG TCAGACTGCT CACAACCACA CATAATTCAA GTTCTAGGGG
  ATCTGGCGCC CCCTTCTGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46604326	NES10410963	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	A	T	T	A	T		T	T	A	T
ss148834741	ENSMUSSNP4576116	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31779683					SNP	T	T	T	T	T	T	T	A	T	T	A	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46604326	NES10410963	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92701814 () rs orientation: forward

Symbol	Name	Function Class
Fam47e	family with sequence similarity 47, member E	1114 bp upstream
Rr114837	regulatory region 114837	within coordinates
Rr123707	regulatory region 123707	35 bp proximal
Rr125475	regulatory region 125475	1186 bp proximal
Tssr47317	transcription start site region 47317	1080 bp upstream