rs31779923 SNP Detail

Summary

• ID
  rs31779923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84585651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTATGTGG CTATAAGGGA
  GCCTAGCCTC CTGCCTGGGA CTCCACCTGG GGAAGTGGGG AAGAGACAAG CTCCTGATGG
  ACCAGGGTGT TTGACACCCC CCATTCCCTT GCAGGGGGTA CATGAGTCCA GGGGTGTGAC
  TGAAGACTAT CTGCGCCTCG AGACACTGAT TCAGAAGGTG GTGTCGCCGT ACCTGGGCAC
  Y
  TATGGTCTCT ATTCCAATGA AGGACCTTGT ACCCATTCCT GTATCCTCGG TAGGTATTGA
  CTAGGGCTGG GGCCACAGTG TTGGCAAAAC CAGGATCCCA CAGGGGACTA ACTACAGTCA
  CACAGAATGT CTGTTCCCTG CACCTGTCTA GCCTTGCTGT GTGTAGATGT GGACCTTCAG
  GGTAGACGGG GTATTGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39336877	mCV24773977	ABI	CRAMUS_MOUSE	f	SNP		T					C		C
ss48087305	NES12084275	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T		C	C	C	T		C	T	T	C		C
ss148254510	ENSMUSSNP1019229	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss325039410	CHEV_15_84531880	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31779923					SNP	C	T	C	T	C	T	C	C	C	C	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48087305	NES12084275	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84585651 () rs orientation: forward

Symbol	Name	Function Class
Prr5	proline rich 5 (renal)	within coordinates
Rr304869	regulatory region 304869	451 bp distal
Rr304870	regulatory region 304870	350 bp proximal
Rr314876	regulatory region 314876	595 bp distal
Rr314877	regulatory region 314877	449 bp proximal
Rr404546	regulatory region 404546	591 bp upstream