rs31780443 SNP Detail

Summary

• ID
  rs31780443
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30449611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACACACAC ACACACACAC CGTACCCAAC TGTTCCCCAC
  CTACTGGCTC TTGTTTGCCT CCCTCTAGAC TATCCTCCAG GTAGACATAC TGGGGAGGAT
  K
  CATTACCTGC CCTTCCTTCT AATGCCAGAC TTTAGCCCCA GGCCGGGCTT GCATCTCCGT
  CCCCCTATAC TCGGAGCCAA CAGTACAATG CTTGGGGCT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46068426	mCV25317241	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		G
ss60990288	NES16139111	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		G	G	T	T	G	T	G	G	T
ss148687342	ENSMUSSNP1091873	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31780443					SNP	T	T	T	T	T	T	T	T	G	G	T	T	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990288	NES16139111	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30449611 () rs orientation: forward

Symbol	Name	Function Class
Sbsn	suprabasin	1285 bp upstream
Tmem147os	transmembrane protein 147, opposite strand	within coordinates
Tssr65808	transcription start site region 65808	1340 bp upstream
Tssr71856	transcription start site region 71856	1971 bp downstream