rs31780594 SNP Detail

Summary

• ID
  rs31780594
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92701829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTACAAC CATCTGTAAT
  GGGATCAGAT GCCCTCTTCT GGTGTCTGAA GAAAGCAACA TATTTAAAAT AAATAAATCT
  TAAACATCAA CAACAAAAAC ACCATTTAGT CAGTTCCTTT CTGTTACAAC AGAATACCTG
  AGACTGGGTA ACTTATAAAG AATAGTGCTT TACTTTGTTT GGTCCTTGGT TCAGTAGGTA
  R
  CTGCATGGTG AGGGCCACAT GTTGCTTTAA CTCATGGTAA GAAGACCAAA GAATAGCCAA
  CCTCTCAGAA GTTAAACGAG CACTTGCTGT TGTGAAGAAC AGGAATTCAG TTCCAAGCAC
  CCATGTCAGA CTGCTCACAA CCACACATAA TTCAAGTTCT AGGGGATCTG GCGCCCCCTT
  CTGGCCTCTC TGGGAATATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46604327	NES10410964	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31780594					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46604327	NES10410964	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92701829 () rs orientation: forward

Symbol	Name	Function Class
Fam47e	family with sequence similarity 47, member E	1099 bp upstream
Rr114837	regulatory region 114837	within coordinates
Rr123707	regulatory region 123707	20 bp proximal
Rr125475	regulatory region 125475	1171 bp proximal
Tssr47317	transcription start site region 47317	1065 bp upstream