rs31780839 SNP Detail

Summary

• ID
  rs31780839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84585984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCCTGCA CCTGTCTAGC
  CTTGCTGTGT GTAGATGTGG ACCTTCAGGG TAGACGGGGT ATTGGAGGGT ATCGGGCAAC
  TCCCAGAACA GTGATGGCTC TCCACAGAGA CCCGCCATGC GAAGAGCCTC CATCATCCCT
  GTGCTAGCTC AGAAAGGAAT ACAGAGAAAG TAGGCCCTAG AGAGCCTGCT GGGTCCCTCA
  R
  AAGCCTGCCG TGTCCTCCCT GTTCATTCAG GAATGTCCCT TGGGCACTTG CTGTGTACCA
  GCCCAGAGAC CAAGCCCAGC CTTCCTTCAT AGCTTTGGCC TAGCAGGAAA GATGGGTCAG
  TGAGCCCCCA ATGGTAATCC CTGGGCTACA GAAGCGGATG CAGACTGGAT CATAGGAAGA
  GGCCAGATAG GGTCACTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48087311	NES12084278	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31780839					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48087311	NES12084278	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84585984 () rs orientation: forward

Symbol	Name	Function Class
Prr5	proline rich 5 (renal)	within coordinates
Rr304869	regulatory region 304869	784 bp distal
Rr304870	regulatory region 304870	17 bp proximal
Rr304871	regulatory region 304871	1817 bp proximal
Rr314876	regulatory region 314876	928 bp distal
Rr314877	regulatory region 314877	116 bp proximal
Rr404546	regulatory region 404546	258 bp upstream