rs31780841 SNP Detail

Summary

• ID
  rs31780841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84585999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCCTTGC TGTGTGTAGA
  TGTGGACCTT CAGGGTAGAC GGGGTATTGG AGGGTATCGG GCAACTCCCA GAACAGTGAT
  GGCTCTCCAC AGAGACCCGC CATGCGAAGA GCCTCCATCA TCCCTGTGCT AGCTCAGAAA
  GGAATACAGA GAAAGTAGGC CCTAGAGAGC CTGCTGGGTC CCTCAAAAGC CTGCCGTGTC
  Y
  TCCCTGTTCA TTCAGGAATG TCCCTTGGGC ACTTGCTGTG TACCAGCCCA GAGACCAAGC
  CCAGCCTTCC TTCATAGCTT TGGCCTAGCA GGAAAGATGG GTCAGTGAGC CCCCAATGGT
  AATCCCTGGG CTACAGAAGC GGATGCAGAC TGGATCATAG GAAGAGGCCA GATAGGGTCA
  CTTGGAAGGC TCCCCATCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48087313	NES12084279	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31780841					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48087313	NES12084279	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84585999 () rs orientation: forward

Symbol	Name	Function Class
Prr5	proline rich 5 (renal)	within coordinates
Rr404546	regulatory region 404546	243 bp upstream