rs31780844 SNP Detail

Summary

• ID
  rs31780844
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34142355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTGATCCCTA GGAAAGTGGC AGGCCTCTCT GTAACTGTTA ATAGTGCATG CTCGGCCATG
  TACACTGTAA ATAGCCTTTA CCAAACGTGT TTGACAAGGA CCATAATTAA CATCACTTTA
  GTAAATTGTG ATTTTTTTAA AAAAAGCCAT GATTTATTGA TGTGAGTGGC TTGTTTTCAT
  GTGGCGCCAG AAATGAACCT GTTTAAAAGC TATAACCAAT GGTACTGATC TATCCATTAA
  ATACTGTCCT TAAACTGTAG TTTAATAGTA TTGTCAACTA GGAAAGCTAA AATGGTTTTT
  R
  TTCTGTTGAA GACTGGCCTT ATTAATGGAC AGCTTTCCTC AGAAGTGATT AACAACTTTT
  TTATTGGGTG TTAACATCTG TTTCAAGAAC ATGGCAGTAT GTTTACATGT CGTCAGAAGT
  TTTCTTTGAA TGGAATTTCT AAATTAATTT ACTTGTTTAA ATAAATTCAG AACTGGGTAG
  CATTGTTTTT ATTTGCTTCA CTATTGAGGT GAATAAGAGC TGATGTGCCA CAAATGGAGC
  CTTCAGATGG CTGCTTTGAG CTTCGTGTTC CCTCAGGGGA TGCCAAGATA TGTCTCAAGG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39325640	mCV23546351	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss147538337	ENSMUSSNP1455082	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31780844					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34142355 () rs orientation: forward

Symbol	Name	Function Class
Mtdh	metadherin	within coordinates
Tssr131025	transcription start site region 131025	1042 bp downstream
Tssr131026	transcription start site region 131026	313 bp upstream
Tssr131027	transcription start site region 131027	751 bp upstream
Tssr131028	transcription start site region 131028	852 bp upstream
Tssr131029	transcription start site region 131029	1712 bp upstream