rs31781085 SNP Detail

Summary

• ID
  rs31781085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78294574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAC GCACGTCGTG ATCTACGACG
  R
  CAGTGACCAG GGCCTCTATT CCGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39325542	mCV23092895	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss148183782	ENSMUSSNP6819632	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss325024647	CHEV_15_78240804	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31781085					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78294574 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7287	CpG island 7287	within coordinates
Gm52185	predicted gene, 52185	290 bp downstream
Mpst	mercaptopyruvate sulfurtransferase	within coordinates
Rr505261	regulatory region 505261	382 bp distal
Tssr131946	transcription start site region 131946	646 bp downstream
Tssr131947	transcription start site region 131947	626 bp downstream
Tssr131948	transcription start site region 131948	598 bp downstream
Tssr131949	transcription start site region 131949	452 bp downstream
Tssr131950	transcription start site region 131950	336 bp downstream
Tssr131951	transcription start site region 131951	90 bp downstream