rs31781360 SNP Detail

Summary

• ID
  rs31781360
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51631535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCTCTG CCCAAGGATG
  CTCAAAGAAG TCTGCTTTAA TTCCATCCAC TGAGACAAAA CTTGCTTTCA TTCTGGGTCT
  TCAAAGGTAG CAAACACTGT TAAATTGCCC AGTTGACATA TGGGAAATAC TGTCAAGAAA
  ATACCTAAAT TATCAAAGGG AACTAAATTT TTTGTTTGTT CTGACAGAGT GCATTGGAGC
  Y
  GTGTTCCCCT TCTCTTGCAA ATGCCCTCTT GGCTCTTGGT CTCTCACAAC CTTAGTCCCT
  TTTCATAGAT AGTTCTACAG AGTGGAAGCA GCATTCTCAA CGAGTAGATG TCAGCTGGGG
  TTCAGCCTGG TTGAGTTCAG TTTTGGAGGA AGACAACCCC AAGGTCTTTG ATGTTATAAA
  TGCTGAGGTA TCATGCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45070105	mCV23215668	ABI	CRAMUS_MOUSE	f	SNP		C	T						T
ss47350151	NES11070504	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	T	T	C	C	T	T	C
ss149111841	ENSMUSSNP7208799	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31781360					SNP	C	C	T	T	T	T	T	C	T	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350151	NES11070504	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51631535 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	1622 bp upstream
Rr410724	regulatory region 410724	1430 bp proximal
Tssr6634	transcription start site region 6634	1617 bp upstream
Tssr6635	transcription start site region 6635	1794 bp upstream
Tssr6636	transcription start site region 6636	1872 bp upstream