rs31781439 SNP Detail

Summary

• ID
  rs31781439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92703024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGCGCGC CAAATTGGGC
  AGGTCCGGGC AACTCGGGGC TGTGCTGGTC TCCTAGCAAC TTGGGAAGCC GTGGGAGAAA
  CTTGCCACAC AAGACTGGGC AGTGCCATGG CGGAGTGTGG GCAGCGGCTC CAGCCCACGA
  CCCTGGCTCC TAGACTGCTG AGGGAGCGCC AGAACTGCGG GTGGTAAGCA CTGTGCTCTT
  R
  CAGCTACTAG CAGGGAACCT GGGTCCCCTG GGCTGGGGCG GAGGTAGACC TCGCTGCTAG
  GAGTTGTCTT TCTCCGTGTC CCCTGTCCCC TCACTATTGT AATAGAGTAA AAGGACCAAT
  CTGGAGCAAC ACAGCCTTTC CAGTTTGTTG GGGTTTTGCC ACGAACCGCC CAGGGGGAGA
  GGCTGTCCTA GCCTACCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46604343	NES10410876	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31781439					SNP	A	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46604343	NES10410876	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92703024 () rs orientation: forward

Symbol	Name	Function Class
Fam47e	family with sequence similarity 47, member E	within coordinates
Rr114837	regulatory region 114837	824 bp distal
Rr123707	regulatory region 123707	954 bp distal
Rr125475	regulatory region 125475	within coordinates
Tssr47317	transcription start site region 47317	95 bp downstream