rs31782269 SNP Detail

Summary

• ID
  rs31782269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93593046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATTTACA TTATTTATTT
  ATTTATTTAT TTATTTATTT ATTTATTTAT ATCTGTTTTT AAGATAGGGT CTGTCGATGT
  AGCTCTGGCT GTCCTAGAAT TCACTCTGTA GACTAGGCTG GACTGAAACT CATGAAACTC
  TACCTGCCTC TGCCTTGTGA GTGCTGGGAT TATTAAAGGT CTGTGCCACC ACAGCCTGGT
  Y
  TGCAACTTCC ATTAATGTGG TAATGCATAA TTACATCAAT TGCATTTGGG CAATGACTTA
  AATAAATACC AATGAGCATT CCACTAGTAA GTAAAGGTGA CCAGAAGAGA CAAGGAGAAG
  AAACTTCTGG ATTCTTCTCC CCCAACTCCT CCCAGACCTT TCCCACCTCC CCAACCAAAT
  TCACACCCCT TTTTCCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss49775066	NES12383578	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs31782269					SNP	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49775066	NES12383578	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93593046 () rs orientation: forward

Symbol	Name	Function Class
Gm9005	predicted gene 9005	1871 bp upstream
Rr4987	regulatory region 4987	846 bp distal
Rr10841	regulatory region 10841	803 bp distal