rs31782270 SNP Detail

Summary

• ID
  rs31782270
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93591168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCAGCA CAGGCCAGTA
  GCCCTTGCTT CTTCTCTTGC TTTTTCTCCG ATCTGTACTT GTGAGCAAGC TTATGCAGCT
  GAATAGCTGT TTGCCTGTCC AGGGTCATGG TGAACTGGTT AATGGCAGGA AGTACTTTGA
  GCCGCTTATA GAGGATGGCT CCTTGCCGCT GCAGCCTGAT GTAGCCGGGC CAATTGACGA
  R
  GCGCATTAGA TCTCTTTGGG GCTGGATGTC CTGCCCAGTG CCGAAGTTCT TGGAACTTTT
  CTCAAACAAA GGATTGACCA CCTTTTTGGC TTCCTGTTTC TTGACGACGG CAGGGGGGCC
  GGGGCCACCT TCTTCCCCTT GGCTTTCTTT CCTTTGGGCA TCTTGCTCAG CTGGTAGAGA
  GAGCTTTGTA TTTTCTTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss49775067	NES12383598	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs31782270					SNP	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49775067	NES12383598	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93591168 () rs orientation: forward

Symbol	Name	Function Class
Gm9005	predicted gene 9005	within coordinates
Rr4987	regulatory region 4987	633 bp proximal
Rr7998	regulatory region 7998	1129 bp distal
Rr10841	regulatory region 10841	678 bp proximal