rs31782272 SNP Detail

Summary

• ID
  rs31782272
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93590651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTAGGTGC ATCTCCTTTT
  TATTTCCTTT TCCCTTTTTC TTTTTATTAT TTAAATTATA TCTATGTACA GAAAACTTAG
  TGTACATTTA ACCCAATGTA GTGGCAAGTT CTTTAGCCTT TTCTTTTCCA GCTCAGCAAT
  GCAAGCCACA GACTTAGGAC CCAGGATGTT GCCTCCCCAG TGGCAGCAGA TCTGGTCATT
  R
  TAATTGGTCC TAATAGTTTC CACCAGCTTA GCCAGAGCAC CCTTGTCTTC CGAGTTAACC
  TGTGTGAAGG CAACAGTGGT GCATGTCTTC CTGTAGACGG GGTGCCCCAG CCTGGCCTTT
  CCCTTAAAGA TGCAGTAGGG CACCCCCATC TTTCGGCACA CTGCAGGTAG GAAAACCACC
  AGCTCAATGG GGTCTATGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss49775069	NES12383596	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs31782272					SNP	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49775069	NES12383596	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93590651 () rs orientation: forward

Symbol	Name	Function Class
Gm9005	predicted gene 9005	within coordinates
Rr4986	regulatory region 4986	1651 bp distal
Rr4987	regulatory region 4987	1150 bp proximal
Rr7998	regulatory region 7998	612 bp distal
Rr10841	regulatory region 10841	1195 bp proximal