rs31782441 SNP Detail

Summary

• ID
  rs31782441
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:124347847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTTTCTG TCACTGTGTG
  TATATTTCTA CTCCAGCTAT CTGAGGAGGC TGAGTCTGTC TTGGGGGTGA GAGCATCGGC
  CTGGGAGGTT TCAGTCCTGC ACTACCTTCG TGGTGAGACA AACCACTAGG GAGAAGAGGG
  TACCAGAGTG AGGTGATCTG GTTGGTGGAG ACTTTGGGGC TAAAGATTGA AGCTCTGTAC
  R
  TGAGAATTAC TCATTGATAG CTCAAAGATG AAACTGAATT AGGCTTAATA GTGTGCCCCA
  GAAAATCCTT GTCATATGGA ACTACAGATT GTGGCCTCAT TTGGAAATAG CATCTGAATA
  GATGTAAAAG GTAAGGTCAT GATGGATATG AGTGGACCAT ACAAAGGGAG ATTTAGACAC
  AGACAGATAG AGGAACACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48088162	NES11866378	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31782441					SNP	A	A	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48088162	NES11866378	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124347847 () rs orientation: forward

Symbol	Name	Function Class
1700060L04Rik	RIKEN cDNA 1700060L04 gene	1274 bp upstream
Gm44006	predicted gene, 44006	within coordinates
Gm67497	predicted gene, 67497	within coordinates