rs31783128 SNP Detail

Summary

• ID
  rs31783128
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93256988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGCTGGC CACGCTCGAC
  CGGAGCGGTC CCCAGCGAGC TCGCACAGAG CGCCCTCGCG CGGAGATCTG GGGAAGGGTT
  CGAGGATGAG ATGATGGAGG AAGAGTCCAG TCCTCTCCGA CCTCGCCCCC GCCCCTCACC
  TCCCCTACCC CTTGATCGCT AGAGAAATTT CTAAGGCCAG TGAGATGGTG TATGGTGACA
  Y
  TAGTCTGTAT CCGCGTGAAT GTAGCCTGGA AGCCGGGTGT CCACAGACTT TTTTTTTTCT
  GAAGCTGAAT CTTGGAAACC CTCCATTAGA CATCTTATTT TTCCTCTTGT GTTAAAAATA
  AGTGATGTTT AATGTGAGTG CTGGCTCCTA CGTAATCTCC GCACTCAAGA GGCAGAAACA
  CGAACTGGCT AACCTGGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49775214	NES12386598	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31783128					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49775214	NES12386598	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93256988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22831	CpG island 22831	87 bp distal
Eif2s3x	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	731 bp upstream
Rr395367	regulatory region 395367	within coordinates
Rr692435	regulatory region 692435	183 bp distal
Rr692436	regulatory region 692436	133 bp distal
Rr692437	regulatory region 692437	372 bp proximal
Tssr163780	transcription start site region 163780	720 bp upstream
Tssr163781	transcription start site region 163781	686 bp upstream
Tssr163782	transcription start site region 163782	460 bp upstream