rs31783133 SNP Detail

Summary

• ID
  rs31783133
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93254620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGATGC AATAAAATTT
  AAAAGAGTAG TCCCAGCTCC TGGGGAGCAG AGGCAGTCTA AGAACTCACT TCAACTCTGA
  GTTTAAGCTT AGCTTGGTCT ACAAAGTGAG TTCCTGGACA GCCAGGGCTA TGTAGACAGA
  CCTTATCTCA AACAAAAATT AAATATGTTT AAATGTTCAC TTGAAATGTT GTTATCCTGA
  Y
  TGAAAAATTA TTCATTTACA TACTCTTCTA CTAGTTCAAA ACAACAACAA AACCCCTAAA
  ATCACCCCCG AAACAAAACA AAAACACCAA AGATGTCAAG CACACAGCCA TCATACTGTC
  ATATTAGACA AACTCTGATA CAACACACTC ATAACCCTTG TATTCAGAAG TCTGAGGAGA
  AGGATTGCCT TGACTTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49775219	NES12386615	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31783133					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49775219	NES12386615	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93254620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22831	CpG island 22831	1476 bp proximal
Eif2s3x	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	within coordinates
Rr395367	regulatory region 395367	1094 bp upstream
Rr692435	regulatory region 692435	1627 bp proximal
Tssr163780	transcription start site region 163780	1624 bp downstream
Tssr163781	transcription start site region 163781	1671 bp downstream
Tssr163782	transcription start site region 163782	1891 bp downstream