rs31783239 SNP Detail

Summary

• ID
  rs31783239
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92704002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAATAATT TGCTTTGAAA
  GAATTGTAGA CTCAGGAGAG AGCGCAAATG TCCAAGATCC CATATAGCCT TCTGGAGCTG
  TTTCCAATGG CAAACACATC TTACACATCT ATACCCCACC ACCAAACCAG GACTGCAGCT
  TTGTGGCAAT ATAGTGGTTA AATAAAACCT CTGTGTTTCA TTAGCTCTCA CTTCTGTAAA
  W
  TTTTTTGTAA GATACCAACT GCTTTATGAC CACAGTATCA GTTACCTTTC TCATTGCTAT
  GGAAGAATAC TGTCAAGAAA CAAGTACTGG TTCTGGCTCA AAATTTAGGG AGGTATTGGT
  CCATGCTGGT GGGAAAGGTA GGCCTCCCAG GCAGCTCCAT CCACAGAGAT GAGCACTTTT
  GGCATGGCTT GCTCATATCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46604363	NES10410845	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T	A	T	T	T	A	T	T	T	A
ss148834827	ENSMUSSNP4838642	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31783239					SNP	A	A	T	T	T	T	T	A	T	T	T	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46604363	NES10410845	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92704002 () rs orientation: forward

Symbol	Name	Function Class
Fam47e	family with sequence similarity 47, member E	within coordinates
Rr114837	regulatory region 114837	1802 bp distal
Rr123707	regulatory region 123707	1932 bp distal
Rr125475	regulatory region 125475	801 bp distal
Tssr47317	transcription start site region 47317	1073 bp downstream