rs31783268 SNP Detail

Summary

• ID
  rs31783268
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189856472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATACCTTGGG GGAAAAAAAA AAACAGAGGC ACTGAGAGAT
  CAGAAGGACT CATTCAGGGC CATTTTACTC CAAGATTGTC ATTCTCCAAA TAAGCCTTTC
  R
  GAATTTCTAT TTGTCAAGTC CTTGCTCCCA TAGCAATTAA TGTATGAGAC CTGTCTGTCT
  GTCTTTCTGT CTGTCTTCTT TTGTCTTCTC CTGATTAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45069822	mCV23934102	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G	A
ss46765119	NES10646910	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31783268					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46765119	NES10646910	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189856472 () rs orientation: forward

Symbol	Name	Function Class
Gm69899	predicted gene, 69899	1081 bp upstream
Prox1	prospero homeobox 1	Intron
Rr425913	regulatory region 425913	585 bp distal
Rr425914	regulatory region 425914	767 bp proximal
Rr425915	regulatory region 425915	1092 bp proximal