rs31783371 SNP Detail

Summary

• ID
  rs31783371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:124350376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGACACCC TTGTGATCCC
  TGTCCACAAC TGTTCTAACC GTTTCAGATC CATGTTAAGG TTTAGCTATT GTGACAATAT
  TTCTCAAACT TAAAAAAAAA ATGTTAAAAA ACTGAAAGGT AGTGAATAAT GTCAAACTAT
  TATTTCTCTG AAACATTGGC ATGTGCTGAG TGTTTTGTTT GGAGTAGGTA ATGTAATACA
  R
  TTTTGAATTT GGTACATTTA ACAATTAACC TAGGATGCTT TCAAGTATAG ACTCTGGGGG
  GGGGCTATAT TTGAAGGGAC CACAGAGTTT GCACAGCCCC ATAAAGTAAA TAATACAGAA
  TTTTCTCAAG GCTTTTGGAA TCCTAGGAAC AACTCTAGCC CATCTCCTTG CTTTGCACCT
  TGGACCCTTG TCTCCTCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss48088172	NES11866368	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31783371					SNP	G	G	G	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48088172	NES11866368	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124350376 () rs orientation: forward

Symbol	Name	Function Class
1700060L04Rik	RIKEN cDNA 1700060L04 gene	within coordinates
Gm44006	predicted gene, 44006	within coordinates
Gm67497	predicted gene, 67497	1519 bp upstream
Rr638368	regulatory region 638368	1780 bp proximal