rs31783373 SNP Detail

Summary

• ID
  rs31783373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:124350666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACAGCCC CATAAAGTAA
  ATAATACAGA ATTTTCTCAA GGCTTTTGGA ATCCTAGGAA CAACTCTAGC CCATCTCCTT
  GCTTTGCACC TTGGACCCTT GTCTCCTCTT AGTGGATGGA AGACCAATGG CCCAGAATAC
  AGTTACAAAA ATGAAGGATA TTTTGTACAT TACAGAAATG AGGAACTGAT TCTACAGTTC
  Y
  TCCATAGCTT CACGCCTGTG CAGTGGATGA TCTGGGTATG CCCAAGGTTG CTGTCAAGGG
  AACGGAACTT GGTGGCTAAG TAGCACCCTG CTCCTGGCTC GCTGCTCTGC AGTGGCTGTA
  TTGAAAATAT GAATTGTGTT TGAACAAGAG GCTCTACTAA TTCTTATTAC TAGGAAGATA
  GCATTTGAGC TATCCAGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss48088174	NES11866369	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs31783373					SNP	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48088174	NES11866369	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124350666 () rs orientation: forward

Symbol	Name	Function Class
1700060L04Rik	RIKEN cDNA 1700060L04 gene	within coordinates
Gm44006	predicted gene, 44006	within coordinates
Gm67497	predicted gene, 67497	1809 bp upstream
Rr638368	regulatory region 638368	1490 bp proximal