rs31783715 SNP Detail

Summary

• ID
  rs31783715
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74024007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGGTCACA GGGGACAAGG CAGATAGAAA
  AAGAAAGAAT GGAGCAAGCA GTAGAGAAAG GTGGGAGGCA CAAACATCCC AGAGGTCCTG
  AGGTGCAGGG AACCAGAAAG GAACTGAGCT TGGTCTCGTT CCTAGGCCAC CCCAACCTAA
  R
  TCCTGACCGG TCCCATTCTC CTTCAGTCCC CTCACACTGT CACCCCTGAG ACTGGACAGA
  CCACATGGTT CAGAGAAGAT GGTTCCTGCA TCTGCGACAC CATCTCACAC TGGGCTCCTC
  TCCTGCTACA AGAAGAGGCA ACCCCATCCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45070022	mCV23137749	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		G
ss51276060	NES14516447	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	A		G	G	G	G		A	G	G	G		G
ss144681593	ENSMUSSNP3615741	ENSEMBL	ENSEMBL_Sanger	f	SNP			A							G
ss319793224	CHEV_1_74031422	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31783715					SNP	G	G	A	G	G	G	A	G	G	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51276060	NES14516447	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74024007 () rs orientation: forward

Symbol	Name	Function Class
Rr17340	regulatory region 17340	7 bp distal
Rr17341	regulatory region 17341	1594 bp proximal
Rr27623	regulatory region 27623	1742 bp proximal
Tns1	tensin 1	within coordinates
Tssr12228	transcription start site region 12228	351 bp upstream
Tssr12229	transcription start site region 12229	1946 bp downstream