rs31783896 SNP Detail

Summary

• ID
  rs31783896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58545882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG ATACCTACCC TCTATGCTAT
  Y
  AGAATCTATT TTCCTATAGA TAACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45070423	mCV22736704	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss149138148	ENSMUSSNP6127476	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs31783896					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58545882 () rs orientation: forward

Symbol	Name	Function Class
Cpgi280	CpG island 280	1479 bp distal
Gm15834	predicted gene 15834	within coordinates
Orc2	origin recognition complex, subunit 2	1768 bp upstream
Rr396056	regulatory region 396056	1474 bp downstream
Rr411447	regulatory region 411447	1625 bp distal
Rr411448	regulatory region 411448	1740 bp distal
Rr411449	regulatory region 411449	1556 bp distal
Rr411450	regulatory region 411450	1031 bp distal
Tssr6780	transcription start site region 6780	1561 bp downstream
Tssr11783	transcription start site region 11783	1781 bp upstream
Tssr11784	transcription start site region 11784	1758 bp upstream