rs31784241 SNP Detail

Summary

• ID
  rs31784241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:124351377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCATTTAT TGCCATTCTC AAGGGAGATC TGGAATATTC
  CCTGTAACGT GGGGTCCCTT TAAGCATAGT TTGTGTTTCT TGTTTAAATG TATGTTTAAT
  R
  TTATATAGAC ACTAGCCTAG TTGCTTCTTT TTGCCTTGCC CACATTTTTC ATGGTTCCCT
  GAGACTATCT GGCAGCTTGG TCTTATTAAA TAGAATGAGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss48088182	NES11866345	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31784241					SNP	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48088182	NES11866345	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124351377 () rs orientation: forward

Symbol	Name	Function Class
1700060L04Rik	RIKEN cDNA 1700060L04 gene	within coordinates
Gm44006	predicted gene, 44006	within coordinates
Rr638368	regulatory region 638368	779 bp proximal
Rr638369	regulatory region 638369	1903 bp proximal