rs31784368 SNP Detail

Summary

• ID
  rs31784368
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30737518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCGGTTTG GGCTGCTGTC
  TGGCTTCCTG TGGCTTCTGC TTTGGTGGAA GGAAAGGAGG GGAGGGTGAG CACTGAGGGG
  AAGAGATGTG CTCAGCTCCC CAGACCTGCC TGCCAGGGCT CCCTCCACAT GGGGGTATTC
  CAGGCTGAAA TACCAGGTGA CACCTTGCTG GGATGGAGTA GGGACTCTCT TTGAACAGTC
  M
  AGGAGAATTA AATGTGCGCC CACTACCAGT CTTCACCTGG TAGTTTTAAA AACAAAACAA
  AACGAGATAA AATTGGGTCT CTTCAGGCTG ATCTTAAGCT TTTAATCCTC TTGCCAGAGC
  CTCCTTGTGC TGGCATAAAA CAACTTTTAT GTTATCTGGG ATTGAACTCA GAATCTTGTA
  CATGATAAGC CCAGTACCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46068274	mCV22838014	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss322138606	CHEV_7_31823112	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31784368					SNP	A	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30737518 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	within coordinates
Gm71772	predicted gene, 71772	780 bp downstream
Rr644981	regulatory region 644981	1094 bp distal
Rr644982	regulatory region 644982	798 bp distal
Tssr65831	transcription start site region 65831	1085 bp downstream
Tssr65832	transcription start site region 65832	676 bp downstream
Tssr65833	transcription start site region 65833	237 bp downstream
Tssr65834	transcription start site region 65834	206 bp downstream
Tssr71891	transcription start site region 71891	1594 bp upstream
Tssr71892	transcription start site region 71892	999 bp upstream
Tssr71893	transcription start site region 71893	226 bp upstream
Tssr71894	transcription start site region 71894	203 bp upstream
Tssr71895	transcription start site region 71895	174 bp upstream
Tssr71896	transcription start site region 71896	144 bp upstream
Tssr71897	transcription start site region 71897	966 bp downstream