rs31784547 SNP Detail

Summary

• ID
  rs31784547
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102616178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGACTATG TCGAGATCTG
  GGTAATACTA AGTGAGGGTG TTATAAATGA TCAGCCCTAT TGTTAGTTTC TGACCTGATC
  TTCAATAAAG AGATTTTCAT AGCCCCGGCT TTGCTATTCT TCCTTAGTTT AAAGACCTTT
  CTCTAGCCTT TTCATCATCT GCTCCCTACA GTGATAGGCC TTCCTTACTC GATTCAATTT
  M
  TTTCTTTTTG CTTTGTTTTA GCCTGGTTAA ACCCAGGATC ACAGGACACC AGGCCTGGGA
  GTCCCTCCCT TTGAAGGACT CCTAGGACTT TTGATAGCAC TCAGGTGACA GACCCTCAGC
  TCCACCAGAC CTTGTGCCTG AACCTTTCCC CATTCTAGCA AGTTGCCAAG GCCCAGGCTC
  CGCCCATTCC TCCAGCGCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45570722	mCV23032816	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
ss147134465	ENSMUSSNP5522968	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31784547					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102616178 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14509	CpG island 14509	122 bp proximal
Cpgi14510	CpG island 14510	1063 bp proximal
Rr596308	regulatory region 596308	664 bp proximal
Rr596309	regulatory region 596309	1555 bp proximal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1	173 bp upstream
Tssr38069	transcription start site region 38069	1183 bp upstream
Tssr38070	transcription start site region 38070	1290 bp upstream
Tssr38071	transcription start site region 38071	1313 bp upstream