rs31784897 SNP Detail

Summary

• ID
  rs31784897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:124351881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGTGGTA CTAGGATAGG
  ACCATGACAC ATTGTGTTCC CCTTTTACAT AAGTTCTCCA ATAATAAACA CTTTGGTCCT
  ACTCACCAGG TGTCTGTCAT TGAACTGCTT TGTGAGCAGC TAGAGATATG ATCTCACAGC
  ACTGATAATA CATCCACCTT TATCCTAGAT TATCACAGGA GAAACCCTGG TGAGTGGCTT
  R
  TGCTCAGACA GAGAGAAATG TTGGGTCCAG ATTAGCTCAA AGTTAAGTCA GTCAAGCATG
  CCCAAAACGG GCTGGGTTCT TATATTTAGC TTACTGGATA CTTTCCAATA ACTTGTTTTA
  TCCCGTGGGA AAAGATGAAG ATGTGATAGA ACCTCGTTGA TAAAAATCAA ATTAATCTAA
  AAAGTTGGGA AAAAAAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48088188	NES11866348	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31784897					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48088188	NES11866348	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124351881 () rs orientation: forward

Symbol	Name	Function Class
1700060L04Rik	RIKEN cDNA 1700060L04 gene	117 bp downstream
Gm44006	predicted gene, 44006	104 bp downstream
Rr638368	regulatory region 638368	275 bp proximal
Rr638369	regulatory region 638369	1399 bp proximal