rs31784899 SNP Detail

Summary

• ID
  rs31784899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:124352001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGATATG ATCTCACAGC
  ACTGATAATA CATCCACCTT TATCCTAGAT TATCACAGGA GAAACCCTGG TGAGTGGCTT
  GTGCTCAGAC AGAGAGAAAT GTTGGGTCCA GATTAGCTCA AAGTTAAGTC AGTCAAGCAT
  GCCCAAAACG GGCTGGGTTC TTATATTTAG CTTACTGGAT ACTTTCCAAT AACTTGTTTT
  R
  TCCCGTGGGA AAAGATGAAG ATGTGATAGA ACCTCGTTGA TAAAAATCAA ATTAATCTAA
  AAAGTTGGGA AAAAAAACAA CTTTTGAGAG ACATAATAGA AATAGGAAGA TGGAGAAACC
  CACTGGAAAG TATGTGATGT ATGGTGCAGA GATCTGAACA GTTTGAAAGA ATGACTTCCC
  TGTCAGGGGT ACACAGAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss48088190	NES11866349	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs31784899					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48088190	NES11866349	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:124352001 () rs orientation: forward

Symbol	Name	Function Class
1700060L04Rik	RIKEN cDNA 1700060L04 gene	237 bp downstream
Gm44006	predicted gene, 44006	224 bp downstream
Rr638368	regulatory region 638368	155 bp proximal
Rr638369	regulatory region 638369	1279 bp proximal