rs31785116 SNP Detail

Summary

• ID
  rs31785116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:83726819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCTGTAG AGTCACCCAG
  CTGTGAACCG TGTCCATGAG TCGGAGCAAA AGAGGAATGT GTGACCTCAC TCAGGGCTGA
  GCAACAGTAG AGAAATGCAA CATTTTGCTG AGTAACATGG AAATAGATCT AAAATGTATG
  GATTAAGTTT CTCTGAAAAC AACATGATTT TTCAAGGGAA GGAAAGGAAA AGTACTTAGC
  Y
  GTGGTGTCTG AGGTCTTCTT CTTTTTTTCT TTTTTTAACC CAGTCCTTTG GAAAATGAGC
  ACATGAGCAA ATTACTCAGT GCCTGCCACC CAGCTTTGAA ATGTGCTTGT CATAAACCTC
  CAGCTTGTTT AAAAGCATTT TTTAGTAATC CACTCAAGCT TGCTCTCTGT ACAGTCCACT
  GGGGGGCTGA TCTCTACTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46068283	mCV24976366	ABI	CRAMUS_MOUSE	f	SNP		T	C			C	C
ss48283753	NES11749193	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C		C	C	C	T	C	C	T	C
ss145200255	ENSMUSSNP1830363	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31785116					SNP	C	T	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48283753	NES11749193	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:83726819 () rs orientation: forward

Symbol	Name	Function Class
Cemip	cell migration inducing protein, hyaluronan binding	within coordinates
Tssr73416	transcription start site region 73416	46 bp upstream