rs31785976 SNP Detail

Summary

• ID
  rs31785976
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133695846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG GGAGACTTTC CACACAGGGA
  W
  GCCTTTCGGG TACAGCGGGG CAGGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45570151	mCV22578585	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss321344254	CHEV_4_133524450	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31785976					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133695846 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15020	CpG island 15020			within coordinates
Dhdds	dehydrodolichyl diphosphate synthase			493 bp downstream
Hmgn2	high mobility group nucleosomal binding domain 2			mRNA-UTR
				Noncoding-Transcript-Variant
Rr398563	regulatory region 398563			1103 bp downstream
Rr601512	regulatory region 601512			44 bp distal
Rr601513	regulatory region 601513			105 bp proximal
Tssr39509	transcription start site region 39509			382 bp downstream
Tssr43836	transcription start site region 43836			1308 bp upstream
Tssr43837	transcription start site region 43837			1251 bp upstream
Tssr43838	transcription start site region 43838			1227 bp upstream
Tssr43839	transcription start site region 43839			584 bp upstream
Tssr43840	transcription start site region 43840			530 bp upstream
Tssr43841	transcription start site region 43841			409 bp upstream
Tssr43842	transcription start site region 43842			76 bp downstream