rs31786630 SNP Detail

Summary

• ID
  rs31786630
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:92710228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGTGTGGA ACAAATGGTA
  GATTTCCTTC CTTTTTGAGC TCCTATGGTT TAATGAGAGA GAACTTATTC AAGTTATTTT
  GCAGGAATAA AGAATCTCTT TTCGTTGATG CTATGCTTAT CCCATGTTCA CTAATTTGCT
  TAAGAAAAAA ATTGTTTATA GTAAGGATGG GCTTCTGCAG AAGACCATTG GCTTGCATAG
  M
  GTTACTCTAC TCAGGATTAG TAAGGCATTT TACATAGCCT CTCATAAGAC TTCAACGGAC
  TGGGTATTTA AAATAATTGC CTATTGAGAG TTTTTAGATA GCAAGCTTTT GGGAACACAT
  ACAATAATAG TTATTTTCTC ATGGATTCTT AGGGGGAGAA ATATTTAATA GTTGGCTTTA
  AGGCTCAGAG GATAGGCCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49775526	NES12384950	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31786630					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49775526	NES12384950	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:92710228 () rs orientation: forward

Symbol	Name	Function Class
Pcyt1b	phosphate cytidylyltransferase 1, choline, beta isoform	within coordinates
Rr4931	regulatory region 4931	773 bp proximal
Rr10134	regulatory region 10134	1228 bp distal
Rr395360	regulatory region 395360	1466 bp downstream