rs31787176 SNP Detail

Summary

• ID
  rs31787176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59438340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGC CCATGCCGCT GGCTCCCTCC
  Y
  GGCGCCCGCC ACTCCCCGGA GGCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45570166	mCV22954375	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss146402689	ENSMUSSNP7111492	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31787176					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59438340 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14346	CpG island 14346	within coordinates
Rr101075	regulatory region 101075	within coordinates
Susd1	sushi domain containing 1	within coordinates
Tssr37430	transcription start site region 37430	165 bp downstream
Tssr37431	transcription start site region 37431	1798 bp upstream
Tssr41933	transcription start site region 41933	35 bp upstream
Tssr41934	transcription start site region 41934	5 bp downstream
Tssr41935	transcription start site region 41935	310 bp downstream