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rs31787630 SNP Detail
Summary
  • ID
    rs31787630
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr1:160903134 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      ATAAGAATA TATCAACTTA CATAACTAAT
    ACTTTTAGTA CCTTAATCTC TCAGTTAATA GATAAATGAG GGATAGCTAA GTAAATAGTT
    TAACTTTAAC CAAAATATCT TTTGTTCTAG TTTCCTTTAA TCCACATCAT CTACCACTGA
    R
    CTATGTTCCT AACCTGGGAG ACTTTATTTA TTTCCTTATT CATTCCTTCT TTCTTCTGAG
    AACTGAGATG ACATGTGTGC ACCTATGTGA Tttccatgtg tatagtgttt tgcctgcatg
    catatatgta taccacatgt gtgcctgagg                                 
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
AKR/J
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NOD/ShiLtJ
SM/J
WSB/EiJ
ss45070071 mCV24547399 ABI CRAMUS_MOUSE f SNP G A
ss49524749 NES12817517 PERLEGEN MM_PANEL2 f SNP G A G A A A A
ss145905486 ENSMUSSNP6616387 ENSEMBL ENSEMBL_Sanger f SNP G G G
ss320080232 CHEV_1_163005695 CHEVERUD SCREENING_POP f SNP A G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
AKR/J
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NOD/ShiLtJ
SM/J
WSB/EiJ
rs31787630 SNP G G A A G G A A A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49524749 NES12817517 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:160903134 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cenpl centromere protein L Intron
Noncoding-Transcript-Variant
Rr396459 regulatory region 396459 723 bp upstream
Rr421754 regulatory region 421754 670 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory