rs31787671 SNP Detail

Summary

• ID
  rs31787671
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155869312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG CTAGCATCGT TTCTCTCTAT
  M
  AGCTTCAGAA AGGGGATATA GGGGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	SM/J
ss45571059	mCV24976110	ABI	CRAMUS_MOUSE	f	SNP	A			C	A
ss46783971	NES10996755	PERLEGEN	MM_PANEL2	f	SNP		A	A				C
ss321442829	CHEV_4_155158964	CHEVERUD	SCREENING_POP	f	SNP						C		A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	SM/J
rs31787671					SNP	A	A	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46783971	NES10996755	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155869312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15485	CpG island 15485	103 bp distal
Rr606569	regulatory region 606569	689 bp distal
Rr606570	regulatory region 606570	189 bp distal
Rr606571	regulatory region 606571	1127 bp proximal
Tmem278	transmembrane protein 278	within coordinates
Tssr44971	transcription start site region 44971	825 bp upstream
Tssr44972	transcription start site region 44972	43 bp downstream
Tssr44973	transcription start site region 44973	81 bp downstream
Tssr44974	transcription start site region 44974	153 bp downstream
Tssr44975	transcription start site region 44975	167 bp downstream
Tssr44976	transcription start site region 44976	194 bp downstream
Tssr44977	transcription start site region 44977	204 bp downstream
Tssr44978	transcription start site region 44978	1009 bp downstream
Tssr44979	transcription start site region 44979	1028 bp downstream