rs31787799 SNP Detail

Summary

• ID
  rs31787799
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:91261921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTTGAAG TTAGACCTCT
  CTCAACAGAT ACTTTCCAAG TAGGCTAAAG CACATCGGTC TACAATCTTC GTTCTCCCAC
  AGAACTGCAA ACGGGTTAGC TCTATAAAAG GAATGCCCAA GCCCGTGGTT AAAAGATGGG
  GGGGGGGGGA CTTCAAGGGT CTGTTAAGAT AGGTTCATGG AATGGCAGAG ATAACTGGGG
  R
  AAACTGCTTT TTAATTAAAC TCTTAAATGA TGACTTTGAA ACATTCAACA TTTTTCTTTT
  TCACAGACTT GTTTGCTCAG TTTTGACAAA TCTCTCAGAT GTCCCATTTA AGAAGCCATT
  TTACGAGGAT TATCAAACAT CCCTGACCTT CCTTTCCCCA CAAAACACAA GCTCCCTCTC
  CTGACCTTTA GAAAGGGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45571792	mCV25324411	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31787799					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:91261921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14444	CpG island 14444	1078 bp distal
Cpgi14445	CpG island 14445	603 bp distal
Cpgi14446	CpG island 14446	666 bp proximal
Elavl2	ELAV like RNA binding protein 1	within coordinates
Mir6402	microRNA 6402	321 bp upstream
Rr595258	regulatory region 595258	1661 bp distal
Rr595260	regulatory region 595260	1125 bp distal
Rr595261	regulatory region 595261	315 bp distal
Rr595262	regulatory region 595262	279 bp proximal
Tssr42416	transcription start site region 42416	1712 bp upstream
Tssr42417	transcription start site region 42417	1684 bp upstream
Tssr42418	transcription start site region 42418	1637 bp upstream