rs31788060 SNP Detail

Summary

• ID
  rs31788060
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36346215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTAATATGA GCTAATTAAT CACCCAGGCC
  TGTTTTGCTC TATATAATGA AGATAATGAT GGTATGAAAT GCACCGAGCT GTATGAGTAT
  TATAGTTAAT CAACAGAATT TGATTCCGGG GATACTAACT ACATAATAGG AACAGAGTTC
  K
  AGTTCAAGCT AATAAGGCTT TCTGCTTTTA AATCTCAAGT TTTAGCGTCA TCTTCTATAA
  CCCACACGGG TCCAAATGAC TGTTCTCTCT ACTAATCTTG TCCACATTCA CCCTCAACTC
  GTTCACTTCC TCTTTGCACG GTCCATCTTG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45069676	mCV27594578	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
ss148924891	ENSMUSSNP4647306	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
ss319688333	CHEV_1_36363979	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31788060					SNP	G	T	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36346215 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	599 bp upstream
Cpgi139	CpG island 139	437 bp proximal
Gm70585	predicted gene, 70585	within coordinates
Rr366864	regulatory region 366864	776 bp upstream
Rr395991	regulatory region 395991	398 bp upstream
Rr409282	regulatory region 409282	1786 bp distal
Rr409283	regulatory region 409283	within coordinates
Rr409284	regulatory region 409284	480 bp proximal
Rr409285	regulatory region 409285	646 bp proximal
Tssr6253	transcription start site region 6253	593 bp upstream
Tssr6254	transcription start site region 6254	611 bp upstream
Tssr6255	transcription start site region 6255	640 bp upstream
Tssr6256	transcription start site region 6256	925 bp upstream
Tssr6257	transcription start site region 6257	1003 bp upstream
Tssr6258	transcription start site region 6258	1133 bp upstream