rs31788384 SNP Detail

Summary

• ID
  rs31788384
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12772390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTTTCGGT TAAGCTCGGG TATTTCCGTT TGTGGAGGTG
  ACTATTCGGC GGTCTAGCGG GTACTTCCTG GGACGCGCAC CCAGTAGAGT AGGAAGCAGT
  S
  CTTGCGACCA TTTTTGAGCG AGGCGGGTAG TGAGTGGCCG TTTGGCTCTC GGTGGTTCCA
  TTCAATCTTA CACTTACGCG GAGCGCAGCG GAACCGGGC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46068547	mCV23259848	ABI	CRAMUS_MOUSE	f	SNP	C	G	G
ss148342892	ENSMUSSNP5177336	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss322107208	CHEV_7_13623812	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31788384					SNP	C	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12772390 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18335	CpG island 18335	within coordinates
Gm71833	predicted gene, 71833	within coordinates
Rr400106	regulatory region 400106	within coordinates
Rr642445	regulatory region 642445	475 bp distal
Rr642446	regulatory region 642446	797 bp distal
Rr642447	regulatory region 642447	201 bp distal
Rr642448	regulatory region 642448	within coordinates
Rr642449	regulatory region 642449	1303 bp proximal
Tssr64535	transcription start site region 64535	763 bp downstream
Tssr64536	transcription start site region 64536	416 bp downstream
Tssr70651	transcription start site region 70651	1801 bp upstream
Tssr70652	transcription start site region 70652	796 bp upstream
Tssr70653	transcription start site region 70653	771 bp upstream
Tssr70654	transcription start site region 70654	631 bp upstream
Tssr70655	transcription start site region 70655	512 bp upstream
Tssr70656	transcription start site region 70656	494 bp upstream
Tssr70657	transcription start site region 70657	156 bp upstream
Tssr70658	transcription start site region 70658	141 bp upstream
Ube2m	ubiquitin-conjugating enzyme E2M	188 bp upstream